PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S25695.20
Common NameJCGZ_10901, LOC105637103
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 191aa    MW: 21496.4 Da    PI: 9.2457
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S25695.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183989255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr++   ++Wv+e+r+p++n  + r++lg+f t+e+Aa+a++ a+++l+g
  Jcr4S25695.20 39 FYRGVRRRN-GNKWVCEVREPNKN--KSRIWLGTFPTPEMAARAHDIAALALRG 89
                   7*****887.9******9999776..5*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.4973997IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-223999IPR016177DNA-binding domain
SMARTSM003807.6E-2839103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-304099IPR001471AP2/ERF domain
PfamPF008471.4E-124089IPR001471AP2/ERF domain
PRINTSPR003674.4E-84051IPR001471AP2/ERF domain
CDDcd000187.96E-274099No hitNo description
PRINTSPR003674.4E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEFDNGSIPI SSICRFPPEV VMKKRKAGRT KFKETRHPFY RGVRRRNGNK WVCEVREPNK  60
NKSRIWLGTF PTPEMAARAH DIAALALRGD LAILNFPDSA SVLPRPKSSS AKDIKRVVRA  120
FVSTTPSVSP SSSSCSYMST TSQPYLVDHR SNDEFESCYN ETREVSESNA LFMDEEALFN  180
MPVLLDSLAE G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-154097663ATERF1
3gcc_A1e-154097663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075895.11e-140PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotQ9M0L02e-47DRE1A_ARATH; Dehydration-responsive element-binding protein 1A
TrEMBLA0A067KEP41e-140A0A067KEP4_JATCU; Uncharacterized protein
STRINGPOPTR_0009s14990.12e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.15e-37dehydration response element B1A
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]